HL_7ZJX_127

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

7ZJX|1|L5|C|2470, 7ZJX|1|L5|U|2474

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_127 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.3759

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ZJX|1|L5|G|2467
7ZJX|1|L5|U|2468
7ZJX|1|L5|U|2469
7ZJX|1|L5|C|2470
7ZJX|1|L5|U|2471
7ZJX|1|L5|C|2472
7ZJX|1|L5|U|2473
7ZJX|1|L5|U|2474
7ZJX|1|L5|PSU|2475

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain LX

60S ribosomal protein eL22