HL_7ZJX_129

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(A2M)GAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZJX_129 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0972

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ZJX|1|L5|A2M|3456
7ZJX|1|L5|G|3457
7ZJX|1|L5|A|3458
7ZJX|1|L5|A|3459
7ZJX|1|L5|A|3460
7ZJX|1|L5|U|3461

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ll

60S ribosomal protein L36

Chain Lq

60S ribosomal protein eL42

Chain Lx

Ribosomal protein