HL_7ZOD_008
3D structure
- PDB id
- 7ZOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 7ZOD|1|b|A|196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZOD_008 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.0814
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7ZOD|1|b|G|194
7ZOD|1|b|A|195
7ZOD|1|b|A|196
7ZOD|1|b|A|197
7ZOD|1|b|C|198
7ZOD|1|b|A|199
7ZOD|1|b|U|200
7ZOD|1|b|C|201
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain l
- 50S ribosomal protein L15
- Chain v
- Transfer RNA; tRNA
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