HL_7ZOD_020

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

7ZOD|1|b|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_020 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.222

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

7ZOD|1|b|C|611
7ZOD|1|b|G|612
7ZOD|1|b|A|613
7ZOD|1|b|A|614
7ZOD|1|b|U|615
7ZOD|1|b|A|616
7ZOD|1|b|G|617

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4