HL_7ZOD_038

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7ZOD|1|b|A|1453, 7ZOD|1|b|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_038 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1421

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7ZOD|1|b|C|1451
7ZOD|1|b|G|1452
7ZOD|1|b|A|1453
7ZOD|1|b|C|1454
7ZOD|1|b|G|1455
7ZOD|1|b|G|1456
7ZOD|1|b|U|1457
7ZOD|1|b|U|1458
7ZOD|1|b|G|1459

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17