HL_7ZOD_060

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_060 not in the Motif Atlas

Geometric match to HL_4AOB_002

Geometric discrepancy: 0.2193

The information below is about HL_4AOB_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7ZOD|1|b|C|2374
7ZOD|1|b|G|2375
7ZOD|1|b|A|2376
7ZOD|1|b|A|2377
7ZOD|1|b|A|2378
7ZOD|1|b|G|2379

Current chains

Chain b

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L18