HL_7ZOD_062

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_062 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.1034

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7ZOD|1|b|A|2471
7ZOD|1|b|G|2472
7ZOD|1|b|U|2473
7ZOD|1|b|U|2474
7ZOD|1|b|C|2475
7ZOD|1|b|A|2476
7ZOD|1|b|U|2477
7ZOD|1|b|A|2478
7ZOD|1|b|U|2479

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6