HL_7ZOD_072

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

7ZOD|1|v|G|19, 7ZOD|1|v|G|20, 7ZOD|1|v|U|20|||A

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_072 not in the Motif Atlas

Geometric match to HL_2AZX_004

Geometric discrepancy: 0.2596

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

7ZOD|1|v|C|13
7ZOD|1|v|A|14
7ZOD|1|v|G|15
7ZOD|1|v|C|16
7ZOD|1|v|C|17
7ZOD|1|v|U|18
7ZOD|1|v|G|19
7ZOD|1|v|G|20
7ZOD|1|v|U|20|||A
7ZOD|1|v|A|21
7ZOD|1|v|G|22

Current chains

Chain v

Pro-tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA