HL_7ZOD_074
3D structure
- PDB id
- 7ZOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7ZOD_074 not in the Motif Atlas
- Geometric match to HL_5WT1_003
- Geometric discrepancy: 0.3073
- The information below is about HL_5WT1_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
7ZOD|1|v|G|53
7ZOD|1|v|U|54
7ZOD|1|v|U|55
7ZOD|1|v|C|56
7ZOD|1|v|G|57
7ZOD|1|v|A|58
7ZOD|1|v|A|59
7ZOD|1|v|U|60
7ZOD|1|v|C|61
Current chains
- Chain v
- Pro-tRNA
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: