HL_7ZOD_075

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGGUCAUCCCGACUU

Length

15 nucleotides

Bulged bases

7ZOD|1|b|U|884, 7ZOD|1|b|A|886, 7ZOD|1|b|U|887, 7ZOD|1|b|U|894

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZOD_075 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.324

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7ZOD|1|b|G|881
7ZOD|1|b|G|882
7ZOD|1|b|G|883
7ZOD|1|b|U|884
7ZOD|1|b|C|885
7ZOD|1|b|A|886
7ZOD|1|b|U|887
7ZOD|1|b|C|888
7ZOD|1|b|C|889
7ZOD|1|b|C|890
7ZOD|1|b|G|891
7ZOD|1|b|A|892
7ZOD|1|b|C|893
7ZOD|1|b|U|894
7ZOD|1|b|U|895

Current chains

Chain b

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5