HL_7ZOD_076

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GCCUUGAUGUGUAGGAUAGGUGGGAGGCUUAGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGU

Length

86 nucleotides

Bulged bases

7ZOD|1|b|G|2116, 7ZOD|1|b|G|2124, 7ZOD|1|b|A|2132, 7ZOD|1|b|U|2137, 7ZOD|1|b|C|2145, 7ZOD|1|b|C|2146, 7ZOD|1|b|A|2158, 7ZOD|1|b|G|2162, 7ZOD|1|b|A|2163, 7ZOD|1|b|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZOD|1|b|G|2102
7ZOD|1|b|C|2103
7ZOD|1|b|C|2104
7ZOD|1|b|U|2105
7ZOD|1|b|U|2106
7ZOD|1|b|G|2107
7ZOD|1|b|A|2108
7ZOD|1|b|U|2109
7ZOD|1|b|G|2110
7ZOD|1|b|U|2111
7ZOD|1|b|G|2112
7ZOD|1|b|U|2113
7ZOD|1|b|A|2114
7ZOD|1|b|G|2115
7ZOD|1|b|G|2116
7ZOD|1|b|A|2117
7ZOD|1|b|U|2118
7ZOD|1|b|A|2119
7ZOD|1|b|G|2120
7ZOD|1|b|G|2121
7ZOD|1|b|U|2122
7ZOD|1|b|G|2123
7ZOD|1|b|G|2124
7ZOD|1|b|G|2125
7ZOD|1|b|A|2126
7ZOD|1|b|G|2127
7ZOD|1|b|G|2128
7ZOD|1|b|C|2129
7ZOD|1|b|U|2130
7ZOD|1|b|U|2131
7ZOD|1|b|A|2132
7ZOD|1|b|G|2133
7ZOD|1|b|A|2134
7ZOD|1|b|A|2135
7ZOD|1|b|G|2136
7ZOD|1|b|U|2137
7ZOD|1|b|G|2138
7ZOD|1|b|U|2139
7ZOD|1|b|G|2140
7ZOD|1|b|G|2141
7ZOD|1|b|A|2142
7ZOD|1|b|C|2143
7ZOD|1|b|G|2144
7ZOD|1|b|C|2145
7ZOD|1|b|C|2146
7ZOD|1|b|A|2147
7ZOD|1|b|G|2148
7ZOD|1|b|U|2149
7ZOD|1|b|C|2150
7ZOD|1|b|U|2151
7ZOD|1|b|G|2152
7ZOD|1|b|C|2153
7ZOD|1|b|A|2154
7ZOD|1|b|U|2155
7ZOD|1|b|G|2156
7ZOD|1|b|G|2157
7ZOD|1|b|A|2158
7ZOD|1|b|G|2159
7ZOD|1|b|C|2160
7ZOD|1|b|C|2161
7ZOD|1|b|G|2162
7ZOD|1|b|A|2163
7ZOD|1|b|C|2164
7ZOD|1|b|C|2165
7ZOD|1|b|U|2166
7ZOD|1|b|U|2167
7ZOD|1|b|G|2168
7ZOD|1|b|A|2169
7ZOD|1|b|A|2170
7ZOD|1|b|A|2171
7ZOD|1|b|U|2172
7ZOD|1|b|A|2173
7ZOD|1|b|C|2174
7ZOD|1|b|C|2175
7ZOD|1|b|A|2176
7ZOD|1|b|C|2177
7ZOD|1|b|C|2178
7ZOD|1|b|C|2179
7ZOD|1|b|U|2180
7ZOD|1|b|U|2181
7ZOD|1|b|U|2182
7ZOD|1|b|A|2183
7ZOD|1|b|A|2184
7ZOD|1|b|U|2185
7ZOD|1|b|G|2186
7ZOD|1|b|U|2187

Current chains

Chain b

23S rRNA

Nearby chains

Chain v

Transfer RNA; tRNA