HL_7ZRS_017

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

7ZRS|1|2|C|709, 7ZRS|1|2|G|714, 7ZRS|1|2|C|726, 7ZRS|1|2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2471

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7ZRS|1|2|G|703
7ZRS|1|2|C|704
7ZRS|1|2|U|705
7ZRS|1|2|A|706
7ZRS|1|2|A|707
7ZRS|1|2|C|708
7ZRS|1|2|C|709
7ZRS|1|2|U|710
7ZRS|1|2|U|711
7ZRS|1|2|G|712
7ZRS|1|2|A|713
7ZRS|1|2|G|714
7ZRS|1|2|C|726
7ZRS|1|2|U|727
7ZRS|1|2|U|728
7ZRS|1|2|G|729
7ZRS|1|2|G|730
7ZRS|1|2|C|731
7ZRS|1|2|G|732
7ZRS|1|2|A|733
7ZRS|1|2|A|734
7ZRS|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A