HL_7ZRS_052

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_052 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0713

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZRS|1|5|A|357
7ZRS|1|5|G|358
7ZRS|1|5|U|359
7ZRS|1|5|G|360
7ZRS|1|5|A|361
7ZRS|1|5|U|362

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BC

RPL4A isoform 1

Chain Bi

60S ribosomal protein L37-A

Chain Bk

60S ribosomal protein L39