HL_7ZRS_095

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

7ZRS|1|5|C|2540

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_095 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.141

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7ZRS|1|5|A|2536
7ZRS|1|5|A|2537
7ZRS|1|5|U|2538
7ZRS|1|5|U|2539
7ZRS|1|5|C|2540
7ZRS|1|5|A|2541
7ZRS|1|5|U|2542
7ZRS|1|5|U|2543
7ZRS|1|5|U|2544
7ZRS|1|5|U|2545

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S1-A

Chain BG

60S ribosomal protein L8-A