HL_7ZRS_108

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_108 not in the Motif Atlas

Geometric match to HL_5FJC_002

Geometric discrepancy: 0.0799

The information below is about HL_5FJC_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

7ZRS|1|5|C|3026
7ZRS|1|5|G|3027
7ZRS|1|5|A|3028
7ZRS|1|5|G|3029
7ZRS|1|5|A|3030
7ZRS|1|5|G|3031

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain Bl

60S ribosomal protein L40-A