HL_7ZRS_110

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7ZRS|1|5|G|3117, 7ZRS|1|5|C|3121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_110 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0679

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ZRS|1|5|C|3111
7ZRS|1|5|U|3112
7ZRS|1|5|G|3113
7ZRS|1|5|A|3114
7ZRS|1|5|A|3115
7ZRS|1|5|C|3116
7ZRS|1|5|G|3117
7ZRS|1|5|C|3118
7ZRS|1|5|C|3119
7ZRS|1|5|U|3120
7ZRS|1|5|C|3121
7ZRS|1|5|U|3122
7ZRS|1|5|A|3123
7ZRS|1|5|A|3124
7ZRS|1|5|G|3125

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain BN

60S ribosomal protein L16-A

Chain Bl

60S ribosomal protein L40-A