HL_7ZS5_005

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7ZS5|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZS5_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2673

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZS5|1|1|U|194
7ZS5|1|1|U|195
7ZS5|1|1|G|196
7ZS5|1|1|G|197
7ZS5|1|1|A|198
7ZS5|1|1|A|199
7ZS5|1|1|C|200
7ZS5|1|1|A|201

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BZ

60S ribosomal protein L26-A

Chain Bf

60S ribosomal protein L32