HL_7ZS5_041

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

7ZS5|1|1|C|1793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZS5_041 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.1631

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7ZS5|1|1|C|1792
7ZS5|1|1|C|1793
7ZS5|1|1|G|1794
7ZS5|1|1|U|1795
7ZS5|1|1|G|1796

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L43-A

Chain BC

60S ribosomal protein L2-A