HL_7ZS5_048

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

7ZS5|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZS5_048 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.3237

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZS5|1|1|A|2164
7ZS5|1|1|G|2165
7ZS5|1|1|A|2166
7ZS5|1|1|A|2167
7ZS5|1|1|A|2168
7ZS5|1|1|G|2169
7ZS5|1|1|U|2170

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BC

60S ribosomal protein L2-A

Chain BO

60S ribosomal protein L15-A