HL_7ZS5_052

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7ZS5|1|1|A|2372, 7ZS5|1|1|A|2373, 7ZS5|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZS5_052 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.2261

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZS5|1|1|G|2369
7ZS5|1|1|G|2370
7ZS5|1|1|G|2371
7ZS5|1|1|A|2372
7ZS5|1|1|A|2373
7ZS5|1|1|C|2374
7ZS5|1|1|G|2375
7ZS5|1|1|G|2376
7ZS5|1|1|G|2377
7ZS5|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L3

Chain Bf

60S ribosomal protein L32