HL_7ZS5_069

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7ZS5|1|1|G|3116, 7ZS5|1|1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZS5_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1346

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ZS5|1|1|C|3110
7ZS5|1|1|U|3111
7ZS5|1|1|G|3112
7ZS5|1|1|A|3113
7ZS5|1|1|A|3114
7ZS5|1|1|C|3115
7ZS5|1|1|G|3116
7ZS5|1|1|C|3117
7ZS5|1|1|C|3118
7ZS5|1|1|U|3119
7ZS5|1|1|C|3120
7ZS5|1|1|U|3121
7ZS5|1|1|A|3122
7ZS5|1|1|A|3123
7ZS5|1|1|G|3124

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BJ

60S ribosomal protein L9-A

Chain BP

60S ribosomal protein L16-A

Chain Bn

60S ribosomal protein L40-A