HL_7ZUX_014

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_014 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1232

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7ZUX|1|2|A|520
7ZUX|1|2|A|521
7ZUX|1|2|U|522
7ZUX|1|2|G|523
7ZUX|1|2|U|524
7ZUX|1|2|A|525
7ZUX|1|2|A|526
7ZUX|1|2|A|527
7ZUX|1|2|U|528
7ZUX|1|2|A|529
7ZUX|1|2|C|530
7ZUX|1|2|C|531
7ZUX|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A

Chain DY

40S ribosomal protein S24-A