HL_7ZUX_017

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

7ZUX|1|2|C|709, 7ZUX|1|2|A|713, 7ZUX|1|2|G|714, 7ZUX|1|2|G|732, 7ZUX|1|2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_017 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2611

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZUX|1|2|G|703
7ZUX|1|2|C|704
7ZUX|1|2|U|705
7ZUX|1|2|A|706
7ZUX|1|2|A|707
7ZUX|1|2|C|708
7ZUX|1|2|C|709
7ZUX|1|2|U|710
7ZUX|1|2|U|711
7ZUX|1|2|G|712
7ZUX|1|2|A|713
7ZUX|1|2|G|714
7ZUX|1|2|C|726
7ZUX|1|2|U|727
7ZUX|1|2|U|728
7ZUX|1|2|G|729
7ZUX|1|2|G|730
7ZUX|1|2|C|731
7ZUX|1|2|G|732
7ZUX|1|2|A|733
7ZUX|1|2|A|734
7ZUX|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A