HL_7ZUX_040

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7ZUX|1|3|U|125, 7ZUX|1|3|U|127, 7ZUX|1|3|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_040 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.2038

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7ZUX|1|3|G|124
7ZUX|1|3|U|125
7ZUX|1|3|A|126
7ZUX|1|3|U|127
7ZUX|1|3|U|128
7ZUX|1|3|C|129

Current chains

Chain 3

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain EW

60S ribosomal protein L25