HL_7ZUX_100

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_100 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.1354

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7ZUX|1|5|C|2694
7ZUX|1|5|A|2695
7ZUX|1|5|A|2696
7ZUX|1|5|A|2697
7ZUX|1|5|A|2698
7ZUX|1|5|G|2699
7ZUX|1|5|G|2700
7ZUX|1|5|G|2701

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain EI

60S ribosomal protein L10

Chain ES

60S ribosomal protein L21-A

Chain En

60S ribosomal protein L42-A