HL_7ZUX_108

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_108 not in the Motif Atlas

Homologous match to HL_8C3A_066

Geometric discrepancy: 0.1088

The information below is about HL_8C3A_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7ZUX|1|5|C|3026
7ZUX|1|5|G|3027
7ZUX|1|5|A|3028
7ZUX|1|5|G|3029
7ZUX|1|5|A|3030
7ZUX|1|5|G|3031

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain EH

60S ribosomal protein L9-A

Chain El

60S ribosomal protein L40-A