3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
AUUUUGUUGGUUUCU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZUX_125 not in the Motif Atlas
Homologous match to HL_8P9A_236
Geometric discrepancy: 0.3123
The information below is about HL_8P9A_236
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88364.2
Basepair signature
cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

7ZUX|1|2|A|829
7ZUX|1|2|U|830
7ZUX|1|2|U|831
7ZUX|1|2|U|832
7ZUX|1|2|U|833
7ZUX|1|2|G|834
7ZUX|1|2|U|835
7ZUX|1|2|U|836
7ZUX|1|2|G|837
7ZUX|1|2|G|838
7ZUX|1|2|U|839
7ZUX|1|2|U|840
7ZUX|1|2|U|841
7ZUX|1|2|C|842
7ZUX|1|2|U|843

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain DG
40S ribosomal protein S6-A
Chain DL
40S ribosomal protein S11-A

Coloring options:


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