HL_7ZW0_013

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.105

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7ZW0|1|2|A|520
7ZW0|1|2|A|521
7ZW0|1|2|U|522
7ZW0|1|2|G|523
7ZW0|1|2|U|524
7ZW0|1|2|A|525
7ZW0|1|2|A|526
7ZW0|1|2|A|527
7ZW0|1|2|U|528
7ZW0|1|2|A|529
7ZW0|1|2|C|530
7ZW0|1|2|C|531
7ZW0|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sS

40S ribosomal protein S4-B

Chain sW

40S ribosomal protein S9-A

Chain sd

40S ribosomal protein S24-A