HL_7ZW0_016

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

7ZW0|1|2|C|709, 7ZW0|1|2|U|710, 7ZW0|1|2|U|711, 7ZW0|1|2|G|714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_016 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3206

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7ZW0|1|2|G|703
7ZW0|1|2|C|704
7ZW0|1|2|U|705
7ZW0|1|2|A|706
7ZW0|1|2|A|707
7ZW0|1|2|C|708
7ZW0|1|2|C|709
7ZW0|1|2|U|710
7ZW0|1|2|U|711
7ZW0|1|2|G|712
7ZW0|1|2|A|713
7ZW0|1|2|G|714
7ZW0|1|2|C|726
7ZW0|1|2|U|727
7ZW0|1|2|U|728
7ZW0|1|2|G|729
7ZW0|1|2|G|730
7ZW0|1|2|C|731
7ZW0|1|2|G|732
7ZW0|1|2|A|733
7ZW0|1|2|A|734
7ZW0|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sS

40S ribosomal protein S4-B

Chain sT

40S ribosomal protein S6-B