HL_7ZW0_041

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

7ZW0|1|LA|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_041 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0582

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7ZW0|1|LA|U|194
7ZW0|1|LA|U|195
7ZW0|1|LA|G|196
7ZW0|1|LA|G|197
7ZW0|1|LA|A|198
7ZW0|1|LA|A|199
7ZW0|1|LA|C|200
7ZW0|1|LA|A|201

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LG

60S ribosomal protein L4-A

Chain Lb

60S ribosomal protein L26-A

Chain Lh

60S ribosomal protein L32