HL_7ZW0_063

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7ZW0|1|LA|U|1241, 7ZW0|1|LA|G|1242, 7ZW0|1|LA|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_063 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3057

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

7ZW0|1|LA|C|1239
7ZW0|1|LA|A|1240
7ZW0|1|LA|U|1241
7ZW0|1|LA|G|1242
7ZW0|1|LA|G|1243
7ZW0|1|LA|A|1244
7ZW0|1|LA|A|1245
7ZW0|1|LA|G|1246
7ZW0|1|LA|U|1247
7ZW0|1|LA|C|1248
7ZW0|1|LA|G|1249

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains