HL_7ZW0_067

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_067 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.069

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7ZW0|1|LA|A|1462
7ZW0|1|LA|U|1463
7ZW0|1|LA|G|1464
7ZW0|1|LA|A|1465
7ZW0|1|LA|G|1466
7ZW0|1|LA|A|1467
7ZW0|1|LA|A|1468
7ZW0|1|LA|C|1469
7ZW0|1|LA|U|1470

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LS

60S ribosomal protein L17-A

Chain LU

60S ribosomal protein L19-A

Chain Lg

60S ribosomal protein L31-A