HL_7ZW0_093

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_093 not in the Motif Atlas

Homologous match to HL_8C3A_058

Geometric discrepancy: 0.0791

The information below is about HL_8C3A_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7ZW0|1|LA|C|2693
7ZW0|1|LA|A|2694
7ZW0|1|LA|A|2695
7ZW0|1|LA|A|2696
7ZW0|1|LA|A|2697
7ZW0|1|LA|G|2698
7ZW0|1|LA|G|2699
7ZW0|1|LA|G|2700

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LM

60S ribosomal protein L10

Chain LW

60S ribosomal protein L21-A

Chain Lr

60S ribosomal protein L42-A