HL_7ZW0_119

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_119 not in the Motif Atlas

Geometric match to HL_3IGI_005

Geometric discrepancy: 0.3073

The information below is about HL_3IGI_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

7ZW0|1|2|A|829
7ZW0|1|2|U|830
7ZW0|1|2|U|831
7ZW0|1|2|U|832
7ZW0|1|2|U|833
7ZW0|1|2|G|834
7ZW0|1|2|U|835
7ZW0|1|2|U|836
7ZW0|1|2|G|837
7ZW0|1|2|G|838
7ZW0|1|2|U|839
7ZW0|1|2|U|840
7ZW0|1|2|U|841
7ZW0|1|2|C|842
7ZW0|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sT

40S ribosomal protein S6-B

Chain sX

40S ribosomal protein S11-A