HL_8A3D_004

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCCGCGGCGGG

Length

11 nucleotides

Bulged bases

8A3D|1|A|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|C|129
8A3D|1|A|C|130
8A3D|1|A|C|131
8A3D|1|A|G|132
8A3D|1|A|C|133
8A3D|1|A|G|134
8A3D|1|A|G|135
8A3D|1|A|C|136
8A3D|1|A|G|137
8A3D|1|A|G|138
8A3D|1|A|G|139

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain b

Ribosomal protein uL29

Chain d

60S ribosomal protein L37

Chain l

60S ribosomal protein L15