HL_8A3D_009
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 8A3D|1|A|G|315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_009 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.2515
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8A3D|1|A|G|314
8A3D|1|A|G|315
8A3D|1|A|U|316
8A3D|1|A|A|317
8A3D|1|A|A|318
8A3D|1|A|A|319
8A3D|1|A|C|320
8A3D|1|A|U|321
8A3D|1|A|C|322
8A3D|1|A|C|323
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain U
- 60S ribosomal protein L27a
- Chain c
- 60S ribosomal protein L36
- Chain i
- 60S ribosomal protein L36a
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
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