HL_8A3D_013

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GGCC

Length

4 nucleotides

Bulged bases

8A3D|1|A|C|906

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_013 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1908

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8A3D|1|A|G|756
8A3D|1|A|G|757
8A3D|1|A|C|906
8A3D|1|A|C|907

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L18a

Chain o

60S ribosomal protein L9