HL_8A3D_014

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUGG

Length

4 nucleotides

Bulged bases

8A3D|1|A|G|1064

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_014 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.1986

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8A3D|1|A|C|988
8A3D|1|A|U|989
8A3D|1|A|G|1064
8A3D|1|A|G|1065

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L6