HL_8A3D_031

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

UAUAGACAGGAA

Length

12 nucleotides

Bulged bases

8A3D|1|A|A|1960

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|U|1957
8A3D|1|A|A|1958
8A3D|1|A|U|1959
8A3D|1|A|A|1960
8A3D|1|A|G|1961
8A3D|1|A|A|1962
8A3D|1|A|C|1963
8A3D|1|A|A|1964
8A3D|1|A|G|1965
8A3D|1|A|G|2024
8A3D|1|A|A|2025
8A3D|1|A|A|2026

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L18a

Chain g

Ubiquitin-60S ribosomal protein L40

Chain o

60S ribosomal protein L9