HL_8A3D_032
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CAGUCCGCGGACGCUACG
- Length
- 18 nucleotides
- Bulged bases
- 8A3D|1|A|G|2089, 8A3D|1|A|U|2090, 8A3D|1|A|U|2267, 8A3D|1|A|C|2269
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_032 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3541
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8A3D|1|A|C|2087
8A3D|1|A|A|2088
8A3D|1|A|G|2089
8A3D|1|A|U|2090
8A3D|1|A|C|2257
8A3D|1|A|C|2258
8A3D|1|A|G|2259
8A3D|1|A|C|2260
8A3D|1|A|G|2261
8A3D|1|A|G|2262
8A3D|1|A|A|2263
8A3D|1|A|C|2264
8A3D|1|A|G|2265
8A3D|1|A|C|2266
8A3D|1|A|U|2267
8A3D|1|A|A|2268
8A3D|1|A|C|2269
8A3D|1|A|G|2270
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain H
- 60S ribosomal protein L6
- Chain K
- 60S ribosomal protein L18
- Chain k
- 60S ribosomal protein L28
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