HL_8A3D_040

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_040 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0584

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8A3D|1|A|G|2578
8A3D|1|A|G|2579
8A3D|1|A|U|2580
8A3D|1|A|A|2581
8A3D|1|A|A|2582
8A3D|1|A|C|2583

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L27

Chain a

60S ribosomal protein L34