HL_8A3D_055
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 8A3D|1|A|A|3876, 8A3D|1|A|A|3877, 8A3D|1|A|C|3878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_055 not in the Motif Atlas
- Homologous match to HL_8C3A_051
- Geometric discrepancy: 0.0609
- The information below is about HL_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.8
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8A3D|1|A|G|3873
8A3D|1|A|G|3874
8A3D|1|A|G|3875
8A3D|1|A|A|3876
8A3D|1|A|A|3877
8A3D|1|A|C|3878
8A3D|1|A|G|3879
8A3D|1|A|G|3880
8A3D|1|A|G|3881
8A3D|1|A|C|3882
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain I
- 60S ribosomal protein L13a
- Chain Y
- 60S ribosomal protein L32
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