HL_8A3D_058

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8A3D|1|A|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_058 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0974

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8A3D|1|A|C|4193
8A3D|1|A|U|4194
8A3D|1|A|G|4195
8A3D|1|A|OMG|4196
8A3D|1|A|G|4197
8A3D|1|A|G|4198
8A3D|1|A|C|4199
8A3D|1|A|G|4200
8A3D|1|A|G|4201

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L29

Chain p

60S ribosomal protein L10