HL_8A3D_071
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- C(PSU)GAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8A3D|1|A|G|4694, 8A3D|1|A|C|4698
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_071 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.176
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8A3D|1|A|C|4688
8A3D|1|A|PSU|4689
8A3D|1|A|G|4690
8A3D|1|A|A|4691
8A3D|1|A|A|4692
8A3D|1|A|C|4693
8A3D|1|A|G|4694
8A3D|1|A|C|4695
8A3D|1|A|C|4696
8A3D|1|A|U|4697
8A3D|1|A|C|4698
8A3D|1|A|U|4699
8A3D|1|A|A|4700
8A3D|1|A|A|4701
8A3D|1|A|G|4702
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L13a
- Chain g
- Ubiquitin-60S ribosomal protein L40
- Chain o
- 60S ribosomal protein L9
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