HL_8A3D_074

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8A3D|1|A|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_074 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0872

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8A3D|1|A|G|4975
8A3D|1|A|U|4976
8A3D|1|A|A|4977
8A3D|1|A|G|4978
8A3D|1|A|A|4979
8A3D|1|A|C|4980
8A3D|1|A|G|4981
8A3D|1|A|A|4982
8A3D|1|A|C|4983

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain J

60S ribosomal protein L17