HL_8A3D_083
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- UCUUG(1MA)AAC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 8A3D|1|A|C|1325
- QA status
- Modified nucleotides: 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8A3D_083 not in the Motif Atlas
- Homologous match to HL_8P9A_126
- Geometric discrepancy: 0.0656
- The information below is about HL_8P9A_126
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8A3D|1|A|U|1317
8A3D|1|A|C|1318
8A3D|1|A|U|1319
8A3D|1|A|U|1320
8A3D|1|A|G|1321
8A3D|1|A|1MA|1322
8A3D|1|A|A|1323
8A3D|1|A|A|1324
8A3D|1|A|C|1325
8A3D|1|A|A2M|1326
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain U
- 60S ribosomal protein L27a
- Chain V
- 60S ribosomal protein L29
- Chain Y
- 60S ribosomal protein L32
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