HL_8A3D_088

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

(A2M)GAAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_088 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.2491

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8A3D|1|A|A2M|3724
8A3D|1|A|G|3725
8A3D|1|A|A|3726
8A3D|1|A|A|3727
8A3D|1|A|A|3728
8A3D|1|A|PSU|3729

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain c

60S ribosomal protein L36

Chain i

60S ribosomal protein L36a