HL_8A3L_066

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

ACGCUUAUGCGU

Length

12 nucleotides

Bulged bases

8A3L|1|a|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3L_066 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.3355

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8A3L|1|a|A|1169
8A3L|1|a|C|1170
8A3L|1|a|G|1171
8A3L|1|a|C|1172
8A3L|1|a|U|1173
8A3L|1|a|U|1174
8A3L|1|a|A|1175
8A3L|1|a|U|1176
8A3L|1|a|G|1177
8A3L|1|a|C|1178
8A3L|1|a|G|1179
8A3L|1|a|U|1180

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15