HL_8A3L_072

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8A3L|1|a|A|1453, 8A3L|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3L_072 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1466

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8A3L|1|a|C|1451
8A3L|1|a|G|1452
8A3L|1|a|A|1453
8A3L|1|a|C|1454
8A3L|1|a|G|1455
8A3L|1|a|G|1456
8A3L|1|a|U|1457
8A3L|1|a|U|1458
8A3L|1|a|G|1459

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17