HL_8A57_021

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

8A57|1|A|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_021 not in the Motif Atlas

Geometric match to HL_7RQB_021

Geometric discrepancy: 0.1014

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8A57|1|A|U|686
8A57|1|A|G|687
8A57|1|A|A|688
8A57|1|A|A|689
8A57|1|A|U|690
8A57|1|A|A|691
8A57|1|A|G|692

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L33 1

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15